HPC User Site Census: Biosciences Applications

August 6, 2019|Addison Snell, Christopher G. Willard Ph.D., Laura Segervall

EXECUTIVE SUMMARY

Intersect360 Research surveyed the High Performance Computing (HPC) user community to complete its eleventh Site Census study. The study is a look at their
current computer system installations, storage systems, networks, middleware, and application software supporting these computer installations. This
report provides a detailed examination of the biosciences applications installed at a sample of High Performance Computing (HPC) user sites. Our goal
in this analysis is to provide an overview of the biosciences applications space, including the breadth of applications and those that are most commonly
used.

Our Site Census survey results can be found in many reports, including the following:

HPC System Configurations and Technologies
HPC System Vendors Installed
HPC Storage Configurations and Technologies
HPC Storage Vendors Installed
HPC Networking Technologies
HPC Processing Technologies (Including Accelerators)
HPC Operating System Installations
HPC Middleware and Tool Installations
HPC Application Installations (segmented into application domains):
- Biosciences
- Business: Business intelligence, analytics, pattern recognition, ERP, CRM, security, complex event processing, general business
- Chemistry
- Computational Fluid Dynamics (CFD)
- Engineering: Structural analysis, electronic design automation (EDA), general engineering
- Finance and economics
- Geophysics
- Physics
- Scientific research
- Visualization and image analysis
- Weather modeling, climate modeling, environment modeling

Biosciences applications are used to reveal the nature of life and help design medical treatments. They are also used to understand and to enhance agricultural
production. For the purposes of this survey, this segment includes applications such as bioinformatics, bio-molecular modeling, genomics, and pharmacology.

Biosciences is the third-most cited application domain in our most recent Site Census survey analysis, with 282 (11.4%) of the 2,466 mentions. (See Figure
1.) Counting only those respondents who named specific applications, Biosciences accounted for 254 (11.3%) of the 2,256 mentions. 219 open-source or
commercial, licensed applications span 105 different application-supplier combinations, analyzed in this report.

INTRODUCTION

Methodology

Total Responses

HPC APPLICATION USAGE: BIOSCIENCES

INTERSECT360 RESEARCH ANALYSIS

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HPC User Site Census: Biosciences Applications

EXECUTIVE SUMMARY

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